I leave my key in mine while in the garage all the time, sometimes for day, no issues...(yet)Don't leave your key fob in car when it's in the garage, it seems to use have some effect on battery, still investigating.
The clicking from the engine bay are normal, as told to me by dealer tech and Ford.
Do you have something plugged in (usb charger, etc.) or anything aftermarket that may be wired to the battery?
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