Looks like they bolt in behind those plastic covers that pop off in the cargo area:how are these panels secured at the bottom? most of these I have seen screw in where the hard top screws are on top of the hard top lip so you would have to remove them to take the top off. Can you take your top on and off without messing with these?
You may just need to notch those plastic covers a bit to allow them to snap in and sit flush. The molle panels I got had a similar setup:
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